Joint Mathematics Meetings AMS Special Session

Current as of Saturday, January 13, 2024 03:30:04

• Program
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• Deadlines
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• Timetable
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• Inquiries: meet@ams.org

2024 Joint Mathematics Meetings (JMM 2024)

• Moscone North/South, Moscone Center, San Francisco, CA
• January 3-6, 2024 (Wednesday - Saturday)
• Meeting #1192

Associate Secretary for the AMS Scientific Program:

Michelle Ann Manes, American Institute of Mathematics mmanes@secretariat.ams.org

AMS Special Session on Mathematics of DNA and RNA

• Wednesday January 3, 2024, 8:00 a.m.-12:00 p.m.
  AMS Special Session on Mathematics of DNA and RNA, I
  This is a continuation of the series of Special Sessions organized by at previous JMMs and it is based on their success. The Special Session will involve speakers who recently contributed to various aspect of DNA and RNA mathematical models with applications in evolutionary biology, cancer research, origin of life research and other branches of biology and medicine.
  Room 153, The Moscone Center
  Organizers:
  Marek Kimmel, Rice University kimmel@rice.edu
  Chris McCarthy, BMCC, City University of New York
  Johannes Familton, Borough of Manhattan Community College, CUNY
  

  • 8:00 a.m.
    Bayesian Phylogenetic Inference of of DNA Evolution Models
    Wenjian Liu*, Queensborough Community College, CUNY
    (1192-92-28763)
  • 8:30 a.m.
    Graph-based Representations of Cancer Evolution
    Rowan J Barker-Clarke*, Theory Division, Cleveland Clinic Lerner Institute, Cleveland, OH
    (1192-92-28562)
  • 9:00 a.m.
    Modeling cancer evolution as driven by copy number aberrations and point mutations, informed by bulk and single-cell DNA sequencing data
    Khanh Dinh*, Columbia University
    Simon Tavaré, Columbia University
    Ignacio Vázquez-García, Memorial Sloan Kettering Cancer Center
    (1192-92-28785)
  • 10:00 a.m.
    The role of APOBEC3-induced mutations in the differential evolution of monkeypox virus
    Tom Chou, UCLA
    Sara Habibipour, UCLA
    Xiangting Li*, UCLA
    Otto O. Yang, UCLA
    (1192-92-32301)
  • 10:30 a.m.
    A mathematical model revealing chemotherapy sensitivity as a function of cellular DNA content in triple-negative breast cancers
    Noemi Andor, H. Lee Moffitt Cancer Center and Research Institute
    Jackson Cole, H. Lee Moffitt Cancer Center and Research Institute
    Andriy Marusyk, H. Lee Moffitt Cancer Center and Research Institute
    Daria Miroshnychenko, H. Lee Moffitt Cancer Center and Research Institute
    Vural Tagal*, H. Lee Moffitt Cancer Center and Research Institute
    (1192-34-32960)
  • 11:00 a.m.
    Spatial social dilemmas promote diversity
    Christoph Hauert*, The University of British Columbia
    (1192-91-28759)
  • 11:30 a.m.
    Homeostasis, non-equilibrium dynamics and cyclic transformations of base functional mechanisms of biologic systems
    Garri Davydyan*, Appletree Medical Group
    (1192-92-29775)
• Wednesday January 3, 2024, 1:00 p.m.-5:00 p.m.
  AMS Special Session on Mathematics of DNA and RNA, II
  This is a continuation of the series of Special Sessions organized by at previous JMMs and it is based on their success. The Special Session will involve speakers who recently contributed to various aspect of DNA and RNA mathematical models with applications in evolutionary biology, cancer research, origin of life research and other branches of biology and medicine.
  Room 153, The Moscone Center
  Organizers:
  Marek Kimmel, Rice University kimmel@rice.edu
  Chris McCarthy, BMCC, City University of New York
  Johannes Familton, Borough of Manhattan Community College, CUNY
  

  • 1:00 p.m.
    Branching processes with denumerable collections of types, inspired by models of cell evolution in cancer
    Marek Kimmel*, Rice University
    (1192-92-30681)
  • 2:00 p.m.
    A Countable-Type Branching Process Model for the Tug-of-War Cancer Cell Dynamics
    Ren-Yi Wang*, Rice University
    (1192-92-28975)
  • 2:30 p.m.
    Probabilistic methods for evolution of nucleic acid sequences
    Brandon Jerome Legried*, Georgia Institute of Technology
    (1192-92-29187)
  • 3:00 p.m.
    Significant Gene Array Analysis and Cluster-Based Machine Learning Modeling for Breast Cancer Relapse Prediction
    Myrine Barreiro-Arevalo*, The University of Texas Rio Grande Valley
    Hansapani Rodrigo, The University of Texas Rio Grande Valley
    (1192-62-32364)
  • 3:30 p.m.
    Rate-Independent Computation in Continuous Chemical Reaction Networks
    Ho-Lin Chen, National Taiwan University
    David Doty*, UC Davis
    Wyatt Reeves, Harvard University
    David Soloveichik, UT Austin
    (1192-92-30771)
  • 4:00 p.m.
    Thermodynamically Driven Signal Amplification
    David Doty, UC Davis
    Joshua Petrack*, UC Davis
    David Soloveichik, UT Austin
    (1192-68-29846)
  • 4:30 p.m.
    Math For Multiple Targets in One PCR-Melting Assay
    Bob Palais*, University of Utah
    Annie Staker, Co-Dx
    (1192-92-33349)
• Thursday January 4, 2024, 8:00 a.m.-12:00 p.m.
  AMS Special Session on Mathematics of DNA and RNA, III
  This is a continuation of the series of Special Sessions organized by at previous JMMs and it is based on their success. The Special Session will involve speakers who recently contributed to various aspect of DNA and RNA mathematical models with applications in evolutionary biology, cancer research, origin of life research and other branches of biology and medicine.
  Room 153, The Moscone Center
  Organizers:
  Marek Kimmel, Rice University kimmel@rice.edu
  Chris McCarthy, BMCC, City University of New York
  Johannes Familton, Borough of Manhattan Community College, CUNY
  

  • 8:00 a.m.
    The mathematics of ribosome heterogeneity
    Khanh Dao Duc*, University of British Columbia
    (1192-92-30915)
  • 8:30 a.m.
    Connecting phenomenological and mechanistic modeling of gene expression state transitions in health and disease
    Sergio Branciamore, Department of Computational and Quantitative Medicine, City of Hope National Medical Center
    David Frankhouser, Department of Computational and Quantitative Medicine, City of Hope National Medical Center
    Yu-Hsuan Fu, Department of Computational and Quantitative Medicine, City of Hope National Medical Center
    Ya-Huei Kuo, Department of Hematological Malignancies Translational Science, Hematology and Hematopoietic Cell Transplantation, The Gehr Family Center for Leukemia Research, City of Hope National Medical Center
    Guido Marcucci, Department of Hematological Malignancies Translational Science, Hematology and Hematopoietic Cell Transplantation, The Gehr Family Center for Leukemia Research, City of Hope National Medical Center
    Denis O'Meally, Center for Gene Therapy, City of Hope National Medical Center
    Russell Rockne*, Department of Computational and Quantitative Medicine, City of Hope National Medical Center
    Lisa Uechi, Department of Computational and Quantitative Medicine, City of Hope National Medical Center
    Bin Zhang, Department of Hematological Malignancies Translational Science, Hematology and Hematopoietic Cell Transplantation, The Gehr Family Center for Leukemia Research, City of Hope National Medical Center
    (1192-34-31207)
  • 9:30 a.m.
    Designing DNA That Does Math On Its Own
    Matthew Patitz*, University of Arkansas
    (1192-68-29673)
  • 10:00 a.m.
    DNA and RNA structure: An approach through dual quaternions
    Joel Ireta, Universidad Autonoma Metropolitana
    David Orbe*, Universidad Autonoma Metropolitana
    (1192-51-29795)
  • 10:30 a.m.
    A PDE Model for Protocell Evolution and the Origin of Chromosomes via Multilevel Selection
    Daniel Brendan Cooney*, University of Pennsylvania
    Simon A Levin, Department of Ecology and Evolutionary Biology, Princeton University
    Dylan H. Morris, University of California, Los Angeles
    Fernando W. Rossine, Harvard University
    (1192-92-31193)
  • 11:00 a.m.
    The shapes of DNA
    Dimos Gkountaroulis*, Baylor College of Medicine
    Erez Lieberman Aiden, Baylor College of Medicine
    (1192-92-30840)